Full Publication list on Google Scholar.

Selected Publications (*my students and postdocs, # as a corresponding author)

Rajandeep S. Sekhon, Christopher Saski, Rohit Kumar, Barry S. Flinn, Feng Luo, Timothy M. Beissinger, Arlyn J. Ackerman, Matthew W. Breitzman, William C. Bridges, Natalia de Leon, Shawn M. Kaeppler. “Integrated Genome-Scale Analysis Identifies Novel Genes and Networks Underlying Senescence in Maize”. Plant Cell, 31(9):1968-1989, 2019.

Peng Ni, Neng Huang, Zhi Zhang, De-Peng Wang, Fan Liang, Yu Miao, Chuan-Le Xiao, Feng Luo, Jianxin Wang, “DeepSignal: detecting DNA methylation state from Nanopore sequencing reads using deep-learning”, Bioinformatics, 35(22), 4586-4595, 2019.

Chuan-Le Xiao, Song Zhu, Minghui He, De Chen, Qian Zhang, Ying Chen, Guoliang Yu, Jinbao Liu, Shang-Qian Xie, Feng Luo, Zhe Liang, De-Peng Wang, Xiao-Chen Bo, Xiao-Feng Gu, Kai Wang, Guang-Rong Yan, “N6-Methyladenine DNA Modification in the Human Genome”, Molecular Cell, Volume 71, Issue 2, page 306-319.e7, 2018.

Chengqian Lu, Mengyun Yang, Feng Luo, Fang-Xiang Wu, Min Li, Yi Pan, Yaohang Li, Jianxin Wang. “Prediction of lncRNA-disease associations based on inductive matrix completion”, Bioinformatics, 34(19), 3357-3364, 2018.

Chuan-Le Xiao, Ying Chen, Shang-Qian Xie, Kai-Ning Chen, Yan Wang, Yue Han, Feng Luo#, Zhi Xie. “MECAT: fast mapping, error correction, de novo assembly for single-molecule sequencing reads”, Nature Methods, 14(11):1072-1074, 2017. (2016 Impact factor: 25.062).

Pengfie Xuan*, Walter B. Ligon, Pradip K Srimani, Rong Ge and Feng Luo#. “Accelerating big data analytics on HPC clusters using two-level storage”, Parallel Computing, 61, 18-34, 2017.

Yunsheng Wang*, Lijuan Zhou, Xiaoyue Yu, Ed Stover, Feng Luo#, and Yongping Duan. “Transcriptome Profiling of Huanglongbing (HLB) Tolerant and Susceptible Citrus Plants Reveals the Role of Basal Resistance in HLB Tolerance”, Frontiers in Plant Science, 7: 933, 2016.

Ye Deng, Yihuei Jiang, Yunfeng Yang, Zhili He, Feng Luo, Jizhong Zhou. “Molecular Ecological Network Analyses”, BMC Bioinformatics, 13:113, 2012.

Feng Luo#, Bo Li*, Xiu-Feng Wan, Richard H. Scheuermann. “Core and periphery structures in protein interaction networks”. BMC Bioinformatics, 10 (Suppl 4):S8, 2009. Among Top 10 most viewed BMC bioinformatics articles in last year reported in July 2011.

Jizhong Zhou, Ye Deng, Feng Luo, Zhili He, Yunfeng Yang. “Phylogenetic Molecular Ecological Network of Soil Microbial Communities in Response to Elevated CO2”. mBio 2(4):e00122-11, 2011.

Jizhong Zhou, Ye Deng, Feng Luo, Zhili He, Qichao Tu, Xiaoyang Zhi. “Functional molecular ecological networks”. mBio, 1(4):e00169-10, 2010.

Feng Luo, Yunfeng Yang, Jianxin Zhong, Haichun Gao, Latifur Khan, Dorothea K. Thompson, Jizhong Zhou. Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory”. BMC Bioinformatics 8:299, 2007.

Feng Luo#, Yunfeng Yang, Chin-Fu Chen, Roger Chang, Jizhong Zhou, Richard Scheuermann. “Modular Organization of Protein Interaction Network”. Bioinformatics, 23(2): 207-214, 2007.

Feng Luo, Latifur Khan, I-Ling Yen, Farokh Bastani, Jizhong Zhou. “A Dynamical Growing Self-Organizing Tree (DGSOT) For Hierarchical Clustering Gene Expression Profiles”. Bioinformatics, Volume 20, Issue 16, 2605-2617, 2004.